CytometryQC: You get a QC website, you get a QC website, everyone gets a QC website.
Building off infrastructure used to build the UMGCCFCSS InstrumentQC website, and the replication guidelines in original installation tutorial, this R package generalizes and automates the process to allow other flow cytometry cores to quickly generate equivalent InstrumentQC webpages for their own respective instruments.
CYTO attendees, we are nearly finished with the click once and done installation for Cytek and BD instruments. There are a couple things David has to generalize first for the instrument scripts. Reach out if you are interested in getting started this week rather than next month, reach I out and we will gladly help you work around the couple remaining issues on our end.
Installation
To begin, you will need to ensure you have the correct software required on each individual computer. Please read our GettingStarted vignette and make sure to get everything installed.
Once this is done, you will need to install both Luciernaga and CytometryQC R packages from GitHub.
if(!require("remotes")) install.packages("remotes")
remotes::install_github("https://github.com/DavidRach/Luciernaga")
remotes::install_github("https://github.com/DavidRach/CytometryQC")
library(Luciernaga)
library(CytometryQC)Get Started
Once required software and packages are installed, please read the Getting Started vignette.
Contribute
Our original website was built to show QC data for our Cytek and BD instruments. It can be relatively easily customized to instruments from other manufacturers where QC .fcs files have been acquired daily. If you are interested in getting specific QC report formats for cytometers from other manufacturers incorporated into the default options, please reach out, the more help the merrier.
Found a bug? Report it!
Encountered what you expect is a bug? We’ve caught quite a few, but since everyone’s computer set up is different, there are still a few unknown ones we haven’t encountered during testing. Please report it here and together we can make this open-source project better.