Check the transformation settings to visualize .fcs files — TransformationCheck • Luciernaga

Check the transformation settings to visualize .fcs files

Usage

TransformationCheck(
  x,
  thesecolumns = NULL,
  TransformationChoice = "flowjo_biexp",
  channelRange = 256,
  maxValue = 1e+06,
  pos = 4.5,
  neg = 1,
  widthBasis = -500,
  Multiple = FALSE,
  returnType = "NxN",
  optionalY = "BUV805-A",
  optionalX = "BUV496-A",
  optionalOutpath = NULL,
  optionalBins = 100,
  optionalName = NULL
)

Arguments

x: Iterated in GatingSet object
thesecolumns: Choice of channels to transform
TransformationChoice: Default flowjo_biexp_trans
channelRange: Argument
maxValue: Argument
pos: Argument
neg: Argument
widthBasis: Argument
Multiple: Argument
returnType: Argument
optionalY: Something
optionalX: Something
optionalOutpath: Something
optionalBins: Something
optionalName: Something

Value

A visualization to check transformation setting

Examples

path <- system.file("extdata", package = "Luciernaga")
files <- list.files(path, pattern=".fcs", full.names=TRUE)