Takes the dataframe generated from CytekQCFilePrep and returns all the QC plots

Usage

QC_Plots(
  x,
  FailedFlag,
  MeasurementType = NULL,
  Metadata = NULL,
  plotType = "individual",
  returntype,
  path,
  filename,
  thecolumns = 1,
  therows = 3,
  width = 7,
  height = 9,
  strict = FALSE,
  YAxisLabel = NULL,
  RepairVisits = NULL
)

Arguments

x: The data frame object of Aurora QC data generated by CytekQCFilePrep
FailedFlag: Whether to show red flags when a detectors "Out-of-Range" is TRUE
MeasurementType: A list containing character values, will select any present from the column names for plotting
Metadata: An optional character column to use as ggplot factor.
plotType: Whether to return "individual" plots or "comparison" plots (provide Metadata name!)
returntype: Whether to return to pdf, patchwork or plots.
path: Location path to return the pdf
filename: File name to save as.
thecolumns: The number of columns per page
therows: The number of rows per page
width: Desired page width
height: Desired page height
strict: Default FALSE, when TRUE, parameters must be exact match for MeasurementType rather than simply containing those character strings.
YAxisLabel: Character string for the y-axis label.
RepairVisits: Passed data.frame of engineer visits for vertical lines, default NULL.

Value

The pdf and/the plots.

Examples

library(ggplot2)

File_Location <- system.file("extdata", package = "Luciernaga")
CSV_Pattern <- ".CSV$"
CSV_Files <- list.files(path=File_Location, pattern=CSV_Pattern,
                       full.names=TRUE)
TidyData <- QC_FilePrep(CSV_Files, TrackChange = FALSE)
#> Error in QC_FilePrep(CSV_Files, TrackChange = FALSE): could not find function "QC_FilePrep"

StorageLocation <- file.path("C:", "Users", "JohnDoe", "Desktop")

SinglePlot <- "UV7-Gain"

TheSinglePlot <- QC_Plots(x = TidyData, MeasurementType = SinglePlot,
                         FailedFlag = TRUE, returntype="patchwork",
                         path=StorageLocation, filename="CytekAurora5L_QC")
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'x' in selecting a method for function 'colnames': object 'TidyData' not found