Visualize MFI of raw .fcs files to evaluate single color controls.
Source:R/Luciernaga_Brightness.R
Luciernaga_Brightness.Rd
Visualize MFI of raw .fcs files to evaluate single color controls.
Usage
Luciernaga_Brightness(
x,
data,
Downsample = TRUE,
subsample = NULL,
reference,
clearance = 0.02,
Scaled = TRUE
)
Arguments
- x
A passed Fluorophore name corresponding to those found in the data.
- data
A data.frame containing the Luciernaga_FCSToReport raw MFI values.
- Downsample
Whether to Downsample, default is set to TRUE to not overly affect the y-axis
- subsample
If desired, a certain number of cells to take from each cluster. Default is NULL, selecting the number of cells found in the smallest cluster.
- reference
A .csv path or data.frame containing Fluorophore and Detector info.
- clearance
A buffer area multiplier to xmin and xmax when Scaled equals False
- Scaled
Default is set to TRUE, returning logicle transformed MFI. FALSE returns raw MFI.